[Spec Kit] Implementation progress

.github/agents/speckit.analyze.agent.md

@@ -10,6 +10,40 @@ $ARGUMENTS
 
 You **MUST** consider the user input before proceeding (if not empty).
 
+## Pre-Execution Checks
+
+**Check for extension hooks (before analysis)**:
+- Check if `.specify/extensions.yml` exists in the project root.
+- If it exists, read it and look for entries under the `hooks.before_analyze` key
+- If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
+- Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
+- For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
+  - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
+  - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
+- For each executable hook, output the following based on its `optional` flag:
+  - **Optional hook** (`optional: true`):
+    ```
+    ## Extension Hooks
+
+    **Optional Pre-Hook**: {extension}
+    Command: `/{command}`
+    Description: {description}
+
+    Prompt: {prompt}
+    To execute: `/{command}`
+    ```
+  - **Mandatory hook** (`optional: false`):
+    ```
+    ## Extension Hooks
+
+    **Automatic Pre-Hook**: {extension}
+    Executing: `/{command}`
+    EXECUTE_COMMAND: {command}
+
+    Wait for the result of the hook command before proceeding to the Goal.
+    ```
+- If no hooks are registered or `.specify/extensions.yml` does not exist, skip silently
+
 ## Goal
 
 Identify inconsistencies, duplications, ambiguities, and underspecified items across the three core artifacts (`spec.md`, `plan.md`, `tasks.md`) before implementation. This command MUST run only after `/speckit.tasks` has successfully produced a complete `tasks.md`.
@@ -162,6 +196,37 @@ At end of report, output a concise Next Actions block:
 
 Ask the user: "Would you like me to suggest concrete remediation edits for the top N issues?" (Do NOT apply them automatically.)
 
+### 9. Check for extension hooks
+
+After reporting, check if `.specify/extensions.yml` exists in the project root.
+- If it exists, read it and look for entries under the `hooks.after_analyze` key
+- If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
+- Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
+- For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
+  - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
+  - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
+- For each executable hook, output the following based on its `optional` flag:
+  - **Optional hook** (`optional: true`):
+    ```
+    ## Extension Hooks
+
+    **Optional Hook**: {extension}
+    Command: `/{command}`
+    Description: {description}
+
+    Prompt: {prompt}
+    To execute: `/{command}`
+    ```
+  - **Mandatory hook** (`optional: false`):
+    ```
+    ## Extension Hooks
+
+    **Automatic Hook**: {extension}
+    Executing: `/{command}`
+    EXECUTE_COMMAND: {command}
+    ```
+- If no hooks are registered or `.specify/extensions.yml` does not exist, skip silently
+
 ## Operating Principles
 
 ### Context Efficiency

.github/agents/speckit.checklist.agent.md

@@ -31,6 +31,40 @@ $ARGUMENTS
 
 You **MUST** consider the user input before proceeding (if not empty).
 
+## Pre-Execution Checks
+
+**Check for extension hooks (before checklist generation)**:
+- Check if `.specify/extensions.yml` exists in the project root.
+- If it exists, read it and look for entries under the `hooks.before_checklist` key
+- If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
+- Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
+- For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
+  - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
+  - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
+- For each executable hook, output the following based on its `optional` flag:
+  - **Optional hook** (`optional: true`):
+    ```
+    ## Extension Hooks
+
+    **Optional Pre-Hook**: {extension}
+    Command: `/{command}`
+    Description: {description}
+
+    Prompt: {prompt}
+    To execute: `/{command}`
+    ```
+  - **Mandatory hook** (`optional: false`):
+    ```
+    ## Extension Hooks
+
+    **Automatic Pre-Hook**: {extension}
+    Executing: `/{command}`
+    EXECUTE_COMMAND: {command}
+
+    Wait for the result of the hook command before proceeding to the Execution Steps.
+    ```
+- If no hooks are registered or `.specify/extensions.yml` does not exist, skip silently
+
 ## Execution Steps
 
 1. **Setup**: Run `.specify/scripts/bash/check-prerequisites.sh --json` from repo root and parse JSON for FEATURE_DIR and AVAILABLE_DOCS list.
@@ -293,3 +327,35 @@ Sample items:
 - Correct: Validation of requirement quality
 - Wrong: "Does it do X?"
 - Correct: "Is X clearly specified?"
+
+## Post-Execution Checks
+
+**Check for extension hooks (after checklist generation)**:
+Check if `.specify/extensions.yml` exists in the project root.
+- If it exists, read it and look for entries under the `hooks.after_checklist` key
+- If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
+- Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
+- For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
+  - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
+  - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
+- For each executable hook, output the following based on its `optional` flag:
+  - **Optional hook** (`optional: true`):
+    ```
+    ## Extension Hooks
+
+    **Optional Hook**: {extension}
+    Command: `/{command}`
+    Description: {description}
+
+    Prompt: {prompt}
+    To execute: `/{command}`
+    ```
+  - **Mandatory hook** (`optional: false`):
+    ```
+    ## Extension Hooks
+
+    **Automatic Hook**: {extension}
+    Executing: `/{command}`
+    EXECUTE_COMMAND: {command}
+    ```
+- If no hooks are registered or `.specify/extensions.yml` does not exist, skip silently

.github/agents/speckit.clarify.agent.md

@@ -14,6 +14,40 @@ $ARGUMENTS
 
 You **MUST** consider the user input before proceeding (if not empty).
 
+## Pre-Execution Checks
+
+**Check for extension hooks (before clarification)**:
+- Check if `.specify/extensions.yml` exists in the project root.
+- If it exists, read it and look for entries under the `hooks.before_clarify` key
+- If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
+- Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
+- For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
+  - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
+  - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
+- For each executable hook, output the following based on its `optional` flag:
+  - **Optional hook** (`optional: true`):
+    ```
+    ## Extension Hooks
+
+    **Optional Pre-Hook**: {extension}
+    Command: `/{command}`
+    Description: {description}
+
+    Prompt: {prompt}
+    To execute: `/{command}`
+    ```
+  - **Mandatory hook** (`optional: false`):
+    ```
+    ## Extension Hooks
+
+    **Automatic Pre-Hook**: {extension}
+    Executing: `/{command}`
+    EXECUTE_COMMAND: {command}
+
+    Wait for the result of the hook command before proceeding to the Outline.
+    ```
+- If no hooks are registered or `.specify/extensions.yml` does not exist, skip silently
+
 ## Outline
 
 Goal: Detect and reduce ambiguity or missing decision points in the active feature specification and record the clarifications directly in the spec file.
@@ -179,3 +213,35 @@ Behavior rules:
 - If quota reached with unresolved high-impact categories remaining, explicitly flag them under Deferred with rationale.
 
 Context for prioritization: $ARGUMENTS
+
+## Post-Execution Checks
+
+**Check for extension hooks (after clarification)**:
+Check if `.specify/extensions.yml` exists in the project root.
+- If it exists, read it and look for entries under the `hooks.after_clarify` key
+- If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
+- Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
+- For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
+  - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
+  - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
+- For each executable hook, output the following based on its `optional` flag:
+  - **Optional hook** (`optional: true`):
+    ```
+    ## Extension Hooks
+
+    **Optional Hook**: {extension}
+    Command: `/{command}`
+    Description: {description}
+
+    Prompt: {prompt}
+    To execute: `/{command}`
+    ```
+  - **Mandatory hook** (`optional: false`):
+    ```
+    ## Extension Hooks
+
+    **Automatic Hook**: {extension}
+    Executing: `/{command}`
+    EXECUTE_COMMAND: {command}
+    ```
+- If no hooks are registered or `.specify/extensions.yml` does not exist, skip silently

.github/agents/speckit.constitution.agent.md

@@ -14,6 +14,40 @@ $ARGUMENTS
 
 You **MUST** consider the user input before proceeding (if not empty).
 
+## Pre-Execution Checks
+
+**Check for extension hooks (before constitution update)**:
+- Check if `.specify/extensions.yml` exists in the project root.
+- If it exists, read it and look for entries under the `hooks.before_constitution` key
+- If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
+- Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
+- For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
+  - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
+  - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
+- For each executable hook, output the following based on its `optional` flag:
+  - **Optional hook** (`optional: true`):
+    ```
+    ## Extension Hooks
+
+    **Optional Pre-Hook**: {extension}
+    Command: `/{command}`
+    Description: {description}
+
+    Prompt: {prompt}
+    To execute: `/{command}`
+    ```
+  - **Mandatory hook** (`optional: false`):
+    ```
+    ## Extension Hooks
+
+    **Automatic Pre-Hook**: {extension}
+    Executing: `/{command}`
+    EXECUTE_COMMAND: {command}
+
+    Wait for the result of the hook command before proceeding to the Outline.
+    ```
+- If no hooks are registered or `.specify/extensions.yml` does not exist, skip silently
+
 ## Outline
 
 You are updating the project constitution at `.specify/memory/constitution.md`. This file is a TEMPLATE containing placeholder tokens in square brackets (e.g. `[PROJECT_NAME]`, `[PRINCIPLE_1_NAME]`). Your job is to (a) collect/derive concrete values, (b) fill the template precisely, and (c) propagate any amendments across dependent artifacts.
@@ -82,3 +116,35 @@ If the user supplies partial updates (e.g., only one principle revision), still
 If critical info missing (e.g., ratification date truly unknown), insert `TODO(<FIELD_NAME>): explanation` and include in the Sync Impact Report under deferred items.
 
 Do not create a new template; always operate on the existing `.specify/memory/constitution.md` file.
+
+## Post-Execution Checks
+
+**Check for extension hooks (after constitution update)**:
+Check if `.specify/extensions.yml` exists in the project root.
+- If it exists, read it and look for entries under the `hooks.after_constitution` key
+- If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
+- Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
+- For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
+  - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
+  - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
+- For each executable hook, output the following based on its `optional` flag:
+  - **Optional hook** (`optional: true`):
+    ```
+    ## Extension Hooks
+
+    **Optional Hook**: {extension}
+    Command: `/{command}`
+    Description: {description}
+
+    Prompt: {prompt}
+    To execute: `/{command}`
+    ```
+  - **Mandatory hook** (`optional: false`):
+    ```
+    ## Extension Hooks
+
+    **Automatic Hook**: {extension}
+    Executing: `/{command}`
+    EXECUTE_COMMAND: {command}
+    ```
+- If no hooks are registered or `.specify/extensions.yml` does not exist, skip silently

.github/agents/speckit.git.commit.agent.md

@@ -0,0 +1,51 @@
+---
+description: Auto-commit changes after a Spec Kit command completes
+---
+
+
+<!-- Extension: git -->
+<!-- Config: .specify/extensions/git/ -->
+# Auto-Commit Changes
+
+Automatically stage and commit all changes after a Spec Kit command completes.
+
+## Behavior
+
+This command is invoked as a hook after (or before) core commands. It:
+
+1. Determines the event name from the hook context (e.g., if invoked as an `after_specify` hook, the event is `after_specify`; if `before_plan`, the event is `before_plan`)
+2. Checks `.specify/extensions/git/git-config.yml` for the `auto_commit` section
+3. Looks up the specific event key to see if auto-commit is enabled
+4. Falls back to `auto_commit.default` if no event-specific key exists
+5. Uses the per-command `message` if configured, otherwise a default message
+6. If enabled and there are uncommitted changes, runs `git add .` + `git commit`
+
+## Execution
+
+Determine the event name from the hook that triggered this command, then run the script:
+
+- **Bash**: `.specify/extensions/git/scripts/bash/auto-commit.sh <event_name>`
+- **PowerShell**: `.specify/extensions/git/scripts/powershell/auto-commit.ps1 <event_name>`
+
+Replace `<event_name>` with the actual hook event (e.g., `after_specify`, `before_plan`, `after_implement`).
+
+## Configuration
+
+In `.specify/extensions/git/git-config.yml`:
+
+```yaml
+auto_commit:
+  default: false          # Global toggle — set true to enable for all commands
+  after_specify:
+    enabled: true          # Override per-command
+    message: "[Spec Kit] Add specification"
+  after_plan:
+    enabled: false
+    message: "[Spec Kit] Add implementation plan"
+```
+
+## Graceful Degradation
+
+- If Git is not available or the current directory is not a repository: skips with a warning
+- If no config file exists: skips (disabled by default)
+- If no changes to commit: skips with a message

.github/agents/speckit.git.feature.agent.md

@@ -0,0 +1,70 @@
+---
+description: Create a feature branch with sequential or timestamp numbering
+---
+
+
+<!-- Extension: git -->
+<!-- Config: .specify/extensions/git/ -->
+# Create Feature Branch
+
+Create and switch to a new git feature branch for the given specification. This command handles **branch creation only** — the spec directory and files are created by the core `/speckit.specify` workflow.
+
+## User Input
+
+```text
+$ARGUMENTS
+```
+
+You **MUST** consider the user input before proceeding (if not empty).
+
+## Environment Variable Override
+
+If the user explicitly provided `GIT_BRANCH_NAME` (e.g., via environment variable, argument, or in their request), pass it through to the script by setting the `GIT_BRANCH_NAME` environment variable before invoking the script. When `GIT_BRANCH_NAME` is set:
+- The script uses the exact value as the branch name, bypassing all prefix/suffix generation
+- `--short-name`, `--number`, and `--timestamp` flags are ignored
+- `FEATURE_NUM` is extracted from the name if it starts with a numeric prefix, otherwise set to the full branch name
+
+## Prerequisites
+
+- Verify Git is available by running `git rev-parse --is-inside-work-tree 2>/dev/null`
+- If Git is not available, warn the user and skip branch creation
+
+## Branch Numbering Mode
+
+Determine the branch numbering strategy by checking configuration in this order:
+
+1. Check `.specify/extensions/git/git-config.yml` for `branch_numbering` value
+2. Check `.specify/init-options.json` for `branch_numbering` value (backward compatibility)
+3. Default to `sequential` if neither exists
+
+## Execution
+
+Generate a concise short name (2-4 words) for the branch:
+- Analyze the feature description and extract the most meaningful keywords
+- Use action-noun format when possible (e.g., "add-user-auth", "fix-payment-bug")
+- Preserve technical terms and acronyms (OAuth2, API, JWT, etc.)
+
+Run the appropriate script based on your platform:
+
+- **Bash**: `.specify/extensions/git/scripts/bash/create-new-feature.sh --json --short-name "<short-name>" "<feature description>"`
+- **Bash (timestamp)**: `.specify/extensions/git/scripts/bash/create-new-feature.sh --json --timestamp --short-name "<short-name>" "<feature description>"`
+- **PowerShell**: `.specify/extensions/git/scripts/powershell/create-new-feature.ps1 -Json -ShortName "<short-name>" "<feature description>"`
+- **PowerShell (timestamp)**: `.specify/extensions/git/scripts/powershell/create-new-feature.ps1 -Json -Timestamp -ShortName "<short-name>" "<feature description>"`
+
+**IMPORTANT**:
+- Do NOT pass `--number` — the script determines the correct next number automatically
+- Always include the JSON flag (`--json` for Bash, `-Json` for PowerShell) so the output can be parsed reliably
+- You must only ever run this script once per feature
+- The JSON output will contain `BRANCH_NAME` and `FEATURE_NUM`
+
+## Graceful Degradation
+
+If Git is not installed or the current directory is not a Git repository:
+- Branch creation is skipped with a warning: `[specify] Warning: Git repository not detected; skipped branch creation`
+- The script still outputs `BRANCH_NAME` and `FEATURE_NUM` so the caller can reference them
+
+## Output
+
+The script outputs JSON with:
+- `BRANCH_NAME`: The branch name (e.g., `003-user-auth` or `20260319-143022-user-auth`)
+- `FEATURE_NUM`: The numeric or timestamp prefix used

.github/agents/speckit.git.initialize.agent.md

@@ -0,0 +1,52 @@
+---
+description: Initialize a Git repository with an initial commit
+---
+
+
+<!-- Extension: git -->
+<!-- Config: .specify/extensions/git/ -->
+# Initialize Git Repository
+
+Initialize a Git repository in the current project directory if one does not already exist.
+
+## Execution
+
+Run the appropriate script from the project root:
+
+- **Bash**: `.specify/extensions/git/scripts/bash/initialize-repo.sh`
+- **PowerShell**: `.specify/extensions/git/scripts/powershell/initialize-repo.ps1`
+
+If the extension scripts are not found, fall back to:
+- **Bash**: `git init && git add . && git commit -m "Initial commit from Specify template"`
+- **PowerShell**: `git init; git add .; git commit -m "Initial commit from Specify template"`
+
+The script handles all checks internally:
+- Skips if Git is not available
+- Skips if already inside a Git repository
+- Runs `git init`, `git add .`, and `git commit` with an initial commit message
+
+## Customization
+
+Replace the script to add project-specific Git initialization steps:
+- Custom `.gitignore` templates
+- Default branch naming (`git config init.defaultBranch`)
+- Git LFS setup
+- Git hooks installation
+- Commit signing configuration
+- Git Flow initialization
+
+## Output
+
+On success:
+- `✓ Git repository initialized`
+
+## Graceful Degradation
+
+If Git is not installed:
+- Warn the user
+- Skip repository initialization
+- The project continues to function without Git (specs can still be created under `specs/`)
+
+If Git is installed but `git init`, `git add .`, or `git commit` fails:
+- Surface the error to the user
+- Stop this command rather than continuing with a partially initialized repository

.github/agents/speckit.git.remote.agent.md

@@ -0,0 +1,48 @@
+---
+description: Detect Git remote URL for GitHub integration
+---
+
+
+<!-- Extension: git -->
+<!-- Config: .specify/extensions/git/ -->
+# Detect Git Remote URL
+
+Detect the Git remote URL for integration with GitHub services (e.g., issue creation).
+
+## Prerequisites
+
+- Check if Git is available by running `git rev-parse --is-inside-work-tree 2>/dev/null`
+- If Git is not available, output a warning and return empty:
+  ```
+  [specify] Warning: Git repository not detected; cannot determine remote URL
+  ```
+
+## Execution
+
+Run the following command to get the remote URL:
+
+```bash
+git config --get remote.origin.url
+```
+
+## Output
+
+Parse the remote URL and determine:
+
+1. **Repository owner**: Extract from the URL (e.g., `github` from `https://github.com/github/spec-kit.git`)
+2. **Repository name**: Extract from the URL (e.g., `spec-kit` from `https://github.com/github/spec-kit.git`)
+3. **Is GitHub**: Whether the remote points to a GitHub repository
+
+Supported URL formats:
+- HTTPS: `https://github.com/<owner>/<repo>.git`
+- SSH: `git@github.com:<owner>/<repo>.git`
+
+> [!CAUTION]
+> ONLY report a GitHub repository if the remote URL actually points to github.com.
+> Do NOT assume the remote is GitHub if the URL format doesn't match.
+
+## Graceful Degradation
+
+If Git is not installed, the directory is not a Git repository, or no remote is configured:
+- Return an empty result
+- Do NOT error — other workflows should continue without Git remote information

.github/agents/speckit.git.validate.agent.md

@@ -0,0 +1,52 @@
+---
+description: Validate current branch follows feature branch naming conventions
+---
+
+
+<!-- Extension: git -->
+<!-- Config: .specify/extensions/git/ -->
+# Validate Feature Branch
+
+Validate that the current Git branch follows the expected feature branch naming conventions.
+
+## Prerequisites
+
+- Check if Git is available by running `git rev-parse --is-inside-work-tree 2>/dev/null`
+- If Git is not available, output a warning and skip validation:
+  ```
+  [specify] Warning: Git repository not detected; skipped branch validation
+  ```
+
+## Validation Rules
+
+Get the current branch name:
+
+```bash
+git rev-parse --abbrev-ref HEAD
+```
+
+The branch name must match one of these patterns:
+
+1. **Sequential**: `^[0-9]{3,}-` (e.g., `001-feature-name`, `042-fix-bug`, `1000-big-feature`)
+2. **Timestamp**: `^[0-9]{8}-[0-9]{6}-` (e.g., `20260319-143022-feature-name`)
+
+## Execution
+
+If on a feature branch (matches either pattern):
+- Output: `✓ On feature branch: <branch-name>`
+- Check if the corresponding spec directory exists under `specs/`:
+  - For sequential branches, look for `specs/<prefix>-*` where prefix matches the numeric portion
+  - For timestamp branches, look for `specs/<prefix>-*` where prefix matches the `YYYYMMDD-HHMMSS` portion
+- If spec directory exists: `✓ Spec directory found: <path>`
+- If spec directory missing: `⚠ No spec directory found for prefix <prefix>`
+
+If NOT on a feature branch:
+- Output: `✗ Not on a feature branch. Current branch: <branch-name>`
+- Output: `Feature branches should be named like: 001-feature-name or 20260319-143022-feature-name`
+
+## Graceful Degradation
+
+If Git is not installed or the directory is not a Git repository:
+- Check the `SPECIFY_FEATURE` environment variable as a fallback
+- If set, validate that value against the naming patterns
+- If not set, skip validation with a warning

.github/agents/speckit.plan.agent.md

@@ -139,15 +139,11 @@ You **MUST** consider the user input before proceeding (if not empty).
    - Skip if project is purely internal (build scripts, one-off tools, etc.)
 
 3. **Agent context update**:
-   - Run `.specify/scripts/bash/update-agent-context.sh copilot`
-   - These scripts detect which AI agent is in use
-   - Update the appropriate agent-specific context file
-   - Add only new technology from current plan
-   - Preserve manual additions between markers
+   - Update the plan reference between the `<!-- SPECKIT START -->` and `<!-- SPECKIT END -->` markers in `.github/copilot-instructions.md` to point to the plan file created in step 1 (the IMPL_PLAN path)
 
-**Output**: data-model.md, /contracts/*, quickstart.md, agent-specific file
+**Output**: data-model.md, /contracts/*, quickstart.md, updated agent context file
 
 ## Key rules
 
-- Use absolute paths
+- Use absolute paths for filesystem operations; use project-relative paths for references in documentation and agent context files
 - ERROR on gate failures or unresolved clarifications

.github/agents/speckit.specify.agent.md

@@ -58,7 +58,7 @@ The text the user typed after `/speckit.specify` in the triggering message **is*
 
 Given that feature description, do this:
 
-1. **Generate a concise short name** (2-4 words) for the branch:
+1. **Generate a concise short name** (2-4 words) for the feature:
    - Analyze the feature description and extract the most meaningful keywords
    - Create a 2-4 word short name that captures the essence of the feature
    - Use action-noun format when possible (e.g., "add-user-auth", "fix-payment-bug")
@@ -70,30 +70,47 @@ Given that feature description, do this:
      - "Create a dashboard for analytics" → "analytics-dashboard"
      - "Fix payment processing timeout bug" → "fix-payment-timeout"
 
-2. **Create the feature branch** by running the script with `--short-name` (and `--json`). In sequential mode, do NOT pass `--number` — the script auto-detects the next available number. In timestamp mode, the script generates a `YYYYMMDD-HHMMSS` prefix automatically:
+2. **Branch creation** (optional, via hook):
 
-   **Branch numbering mode**: Before running the script, check if `.specify/init-options.json` exists and read the `branch_numbering` value.
-   - If `"timestamp"`, add `--timestamp` (Bash) or `-Timestamp` (PowerShell) to the script invocation
-   - If `"sequential"` or absent, do not add any extra flag (default behavior)
+   If a `before_specify` hook ran successfully in the Pre-Execution Checks above, it will have created/switched to a git branch and output JSON containing `BRANCH_NAME` and `FEATURE_NUM`. Note these values for reference, but the branch name does **not** dictate the spec directory name.
 
-   - Bash example: `.specify/scripts/bash/create-new-feature.sh "$ARGUMENTS" --json --short-name "user-auth" "Add user authentication"`
-   - Bash (timestamp): `.specify/scripts/bash/create-new-feature.sh "$ARGUMENTS" --json --timestamp --short-name "user-auth" "Add user authentication"`
-   - PowerShell example: `.specify/scripts/bash/create-new-feature.sh "$ARGUMENTS" -Json -ShortName "user-auth" "Add user authentication"`
-   - PowerShell (timestamp): `.specify/scripts/bash/create-new-feature.sh "$ARGUMENTS" -Json -Timestamp -ShortName "user-auth" "Add user authentication"`
+   If the user explicitly provided `GIT_BRANCH_NAME`, pass it through to the hook so the branch script uses the exact value as the branch name (bypassing all prefix/suffix generation).
+
+3. **Create the spec feature directory**:
+
+   Specs live under the default `specs/` directory unless the user explicitly provides `SPECIFY_FEATURE_DIRECTORY`.
+
+   **Resolution order for `SPECIFY_FEATURE_DIRECTORY`**:
+   1. If the user explicitly provided `SPECIFY_FEATURE_DIRECTORY` (e.g., via environment variable, argument, or configuration), use it as-is
+   2. Otherwise, auto-generate it under `specs/`:
+      - Check `.specify/init-options.json` for `branch_numbering`
+      - If `"timestamp"`: prefix is `YYYYMMDD-HHMMSS` (current timestamp)
+      - If `"sequential"` or absent: prefix is `NNN` (next available 3-digit number after scanning existing directories in `specs/`)
+      - Construct the directory name: `<prefix>-<short-name>` (e.g., `003-user-auth` or `20260319-143022-user-auth`)
+      - Set `SPECIFY_FEATURE_DIRECTORY` to `specs/<directory-name>`
+
+   **Create the directory and spec file**:
+   - `mkdir -p SPECIFY_FEATURE_DIRECTORY`
+   - Copy `.specify/templates/spec-template.md` to `SPECIFY_FEATURE_DIRECTORY/spec.md` as the starting point
+   - Set `SPEC_FILE` to `SPECIFY_FEATURE_DIRECTORY/spec.md`
+   - Persist the resolved path to `.specify/feature.json`:
+     ```json
+     {
+       "feature_directory": "<resolved feature dir>"
+     }
+     ```
+     Write the actual resolved directory path value (for example, `specs/003-user-auth`), not the literal string `SPECIFY_FEATURE_DIRECTORY`.
+     This allows downstream commands (`/speckit.plan`, `/speckit.tasks`, etc.) to locate the feature directory without relying on git branch name conventions.
 
    **IMPORTANT**:
-   - Do NOT pass `--number` — the script determines the correct next number automatically
-   - Always include the JSON flag (`--json` for Bash, `-Json` for PowerShell) so the output can be parsed reliably
-   - You must only ever run this script once per feature
-   - The JSON is provided in the terminal as output - always refer to it to get the actual content you're looking for
-   - The JSON output will contain BRANCH_NAME and SPEC_FILE paths
-   - For single quotes in args like "I'm Groot", use escape syntax: e.g 'I'\''m Groot' (or double-quote if possible: "I'm Groot")
+   - You must only create one feature per `/speckit.specify` invocation
+   - The spec directory name and the git branch name are independent — they may be the same but that is the user's choice
+   - The spec directory and file are always created by this command, never by the hook
 
-3. Load `.specify/templates/spec-template.md` to understand required sections.
+4. Load `.specify/templates/spec-template.md` to understand required sections.
 
-4. Follow this execution flow:
-
-    1. Parse user description from Input
+5. Follow this execution flow:
+    1. Parse user description from arguments
        If empty: ERROR "No feature description provided"
     2. Extract key concepts from description
        Identify: actors, actions, data, constraints
@@ -117,11 +134,11 @@ Given that feature description, do this:
     7. Identify Key Entities (if data involved)
     8. Return: SUCCESS (spec ready for planning)
 
-5. Write the specification to SPEC_FILE using the template structure, replacing placeholders with concrete details derived from the feature description (arguments) while preserving section order and headings.
+6. Write the specification to SPEC_FILE using the template structure, replacing placeholders with concrete details derived from the feature description (arguments) while preserving section order and headings.
 
-6. **Specification Quality Validation**: After writing the initial spec, validate it against quality criteria:
+7. **Specification Quality Validation**: After writing the initial spec, validate it against quality criteria:
 
-   a. **Create Spec Quality Checklist**: Generate a checklist file at `FEATURE_DIR/checklists/requirements.md` using the checklist template structure with these validation items:
+   a. **Create Spec Quality Checklist**: Generate a checklist file at `SPECIFY_FEATURE_DIRECTORY/checklists/requirements.md` using the checklist template structure with these validation items:
 
       ```markdown
       # Specification Quality Checklist: [FEATURE NAME]
@@ -211,9 +228,13 @@ Given that feature description, do this:
 
    d. **Update Checklist**: After each validation iteration, update the checklist file with current pass/fail status
 
-7. Report completion with branch name, spec file path, checklist results, and readiness for the next phase (`/speckit.clarify` or `/speckit.plan`).
+8. **Report completion** to the user with:
+   - `SPECIFY_FEATURE_DIRECTORY` — the feature directory path
+   - `SPEC_FILE` — the spec file path
+   - Checklist results summary
+   - Readiness for the next phase (`/speckit.clarify` or `/speckit.plan`)
 
-8. **Check for extension hooks**: After reporting completion, check if `.specify/extensions.yml` exists in the project root.
+9. **Check for extension hooks**: After reporting completion, check if `.specify/extensions.yml` exists in the project root.
    - If it exists, read it and look for entries under the `hooks.after_specify` key
    - If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
    - Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
@@ -242,7 +263,7 @@ Given that feature description, do this:
        ```
    - If no hooks are registered or `.specify/extensions.yml` does not exist, skip silently
 
-**NOTE:** The script creates and checks out the new branch and initializes the spec file before writing.
+**NOTE:** Branch creation is handled by the `before_specify` hook (git extension). Spec directory and file creation are always handled by this core command.
 
 ## Quick Guidelines
 

.github/agents/speckit.taskstoissues.agent.md

@@ -11,6 +11,40 @@ $ARGUMENTS
 
 You **MUST** consider the user input before proceeding (if not empty).
 
+## Pre-Execution Checks
+
+**Check for extension hooks (before tasks-to-issues conversion)**:
+- Check if `.specify/extensions.yml` exists in the project root.
+- If it exists, read it and look for entries under the `hooks.before_taskstoissues` key
+- If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
+- Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
+- For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
+  - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
+  - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
+- For each executable hook, output the following based on its `optional` flag:
+  - **Optional hook** (`optional: true`):
+    ```
+    ## Extension Hooks
+
+    **Optional Pre-Hook**: {extension}
+    Command: `/{command}`
+    Description: {description}
+
+    Prompt: {prompt}
+    To execute: `/{command}`
+    ```
+  - **Mandatory hook** (`optional: false`):
+    ```
+    ## Extension Hooks
+
+    **Automatic Pre-Hook**: {extension}
+    Executing: `/{command}`
+    EXECUTE_COMMAND: {command}
+
+    Wait for the result of the hook command before proceeding to the Outline.
+    ```
+- If no hooks are registered or `.specify/extensions.yml` does not exist, skip silently
+
 ## Outline
 
 1. Run `.specify/scripts/bash/check-prerequisites.sh --json --require-tasks --include-tasks` from repo root and parse FEATURE_DIR and AVAILABLE_DOCS list. All paths must be absolute. For single quotes in args like "I'm Groot", use escape syntax: e.g 'I'\''m Groot' (or double-quote if possible: "I'm Groot").
@@ -28,3 +62,35 @@ git config --get remote.origin.url
 
 > [!CAUTION]
 > UNDER NO CIRCUMSTANCES EVER CREATE ISSUES IN REPOSITORIES THAT DO NOT MATCH THE REMOTE URL
+
+## Post-Execution Checks
+
+**Check for extension hooks (after tasks-to-issues conversion)**:
+Check if `.specify/extensions.yml` exists in the project root.
+- If it exists, read it and look for entries under the `hooks.after_taskstoissues` key
+- If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
+- Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
+- For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
+  - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
+  - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
+- For each executable hook, output the following based on its `optional` flag:
+  - **Optional hook** (`optional: true`):
+    ```
+    ## Extension Hooks
+
+    **Optional Hook**: {extension}
+    Command: `/{command}`
+    Description: {description}
+
+    Prompt: {prompt}
+    To execute: `/{command}`
+    ```
+  - **Mandatory hook** (`optional: false`):
+    ```
+    ## Extension Hooks
+
+    **Automatic Hook**: {extension}
+    Executing: `/{command}`
+    EXECUTE_COMMAND: {command}
+    ```
+- If no hooks are registered or `.specify/extensions.yml` does not exist, skip silently